https://dliang55.netlify.app/tag/shell/shellWowchemy (https://wowchemy.com)en-us© 2026 Darren LiangMon, 09 May 2022 00:00:00 +0000https://dliang55.netlify.app/media/icon_hu0b7a4cb9992c9ac0e91bd28ffd38dd00_9727_512x512_fill_lanczos_center_3.pnghttps://dliang55.netlify.app/tag/shell/https://dliang55.netlify.app/project/ashs_slurm/Mon, 09 May 2022 00:00:00 +0000https://dliang55.netlify.app/project/ashs_slurm/<p>Simple script that points to the ASHS directory (containing bin and atlases), input directory (BIDS compliant), and output directory (usually derivatives folder), and submits ASHS_main.sh via. SLURM scheduler using regularInteractive provided by neuroglia-helpers (<a href="https://github.com/khanlab/neuroglia-helpers%29" target="_blank" rel="noopener">https://github.com/khanlab/neuroglia-helpers)</a>.</p> <p>Automatic Segmentation of Hippocampal Subfields (ASHS) is developed by members of the Penn Image Computing and Science Laboratory (PICSL) at the Department of Radiology at the University of Pennsylvania (<a href="https://sites.google.com/site/hipposubfields/%29" target="_blank" rel="noopener">https://sites.google.com/site/hipposubfields/)</a>. Atlas version used (ashs_atlas_upennpmc_20161128) and all other ASHS scripts and functions is supported by their group and can be found at <a href="https://www.nitrc.org/frs/?group_id=370" target="_blank" rel="noopener">https://www.nitrc.org/frs/?group_id=370</a>.</p>